NRSP10: Bioinformatic and Database Resources for Specialty Crops

Objective(s):
This workshop will showcase informatics tools and databases developed or under development for specialty crops by the USDA funded National Research Support Project 10. Specific databases include the Genome Database for Rosaceae (GDR), the Citrus Genome Database (CGD), the Genome Database for Vaccinium (GDV) and the Cool Season Food Legume Database (CSFL) as well as various informatic tools such as the FieldBook App for phenotype data collection and GenSAS, an all in one online tool for annotation and curation of genome sequences. Users of these tools and databases will demonstrate the utility of these resources and we will have an open discussion about other resources the specialty crop community would like developed.

Thursday, September 21, 2017: 2:00 PM

King's 3 (Hilton Waikoloa Village)

Coordinator:

Dorrie Main, Professor of Bioinformatics

Moderator:

Mike Kahn, Professor

2:00 PM

What Is NRSP10 and What Can It Do for Specialty Crop Research
Dorrie Main, Professor of Bioinformatics, Washington State University

Audio File Recorded Presentation

2:10 PM

NRSP10 Resources for Translational Tree Fruit Research
Cameron Peace, Washington State University; Stijn Vanderzande, Washington State University; Amy F. Iezzoni, Michigan State University; Sook Jung, Washington State University; Dorrie Main, Washington State University

Audio File Recorded Presentation

2:25 PM

Using Tripal As a Project Database
Margaret Staton, University of Tennessee, Knoxville

Audio File Recorded Presentation

2:40 PM

NRSP10 Resources for Small Fruit Research
Nahla Bassil, USDA-ARS, NCGR

Audio File Recorded Presentation

2:55 PM

Using Gensas for Specialty Crop Commmunity Genome Annotation
Jodi Humann, Washington State University

Audio File Recorded Presentation

3:10 PM

Using Fieldbook and Other Free Apps for Specialty Crop Field and Lab Data Collection
Trevor Rife, Kansas State University