Search and Access Archived Conference Presentations

2018 ASHS Annual Conference

New Data and Functionality in NRSP10 Databases

Thursday, August 2, 2018: 2:05 PM
Jefferson West (Washington Hilton)
Sook Jung, Washington State University, Pullman, WA
Taein Lee, Washington State University, Pullman, WA
Chun-Huai Cheng, Washington State University, Pullman, WA
Jodi Humann, Washington State University, Pullman, WA
Jing Yu, Washington State University, Pullman, WA
Katheryn Buble, Washington State University, Pullman, WA
Morgan Frank, Washington State University, Pullman, WA
Kristin Scott, Washington State University, Pullman, WA
Deah McGaughey, Washignton State University, Pullman, WA
Heidi Hough, Washington State University, Pullman, WA
Victor Unda, Washington State University, Pullman, WA
Ksenija Gasic, Clemson University, Clemson, SC
B. Todd Campbell, USDA-ARS, Florence, SC
Don Jones, Cotton Incorporated, Cary, NC
Sushan Ru, University of Wisconsin-Madison, Madison, WI
James Crabb, Washington State University, Pullman, WA
Kate M. Evans, Washington State University - Tree Fruit Research and Extension Center, Wenatchee, WA
Lisa Wasko DeVetter, Washington State University, Mount Vernon, WA
James R. McFerson, Washington State University, TFREC, Wenatchee, WA
Cameron Peace, Washington State University, Pullman, WA
Mike Kahn, Professor, Washington State University, Pullman, WA
Margaret Staton, University of Tennessee, Knoxville, Knoxville, TN
Jill Wegrzyn, University of Connecticut, Storrs, CT
Stephen P. Ficklin, Washington State University, Pullman, WA
Albert Abbott, University of Kentucky, Lexington, KY
Main Dorrie, Washington State University, Pullman, WA
Audio File Recorded Presentation
National Database Resources (NRSP10) for Crop Genomics, Genetics and Breeding Research is a USDA NIFA, industry and US Land Grant Universities funded project which provides standardized database and informatics resources for undeserved or specialty crops such as tree fruit, nuts, and berries. It builds on existing database resources developed for Rosaceae (Genome Database for Rosaceae, www.rosaceae.org), Citrus (Citrus Genome Database, www.citrusgenomedb.org), Vaccinium (Genome Database for Vaccinium, www.vaccinium.org), Cool Season Food Legumes (Cool Season Food Legume Genome Database, www.csfl.org) and Cotton (CottonGen, www.cottongen.org). Developed using Tripal, an open-source, resource-efficient, modular, well supported software platform, these community databases provide centralized access to integrated genomic, genetic and breeding data and analysis tools for 24 crops representing a combined annual production value of over $25 B. The latest data and functionality provided in these databases includes integrated genomic, genetic and breeding data made accessible through various search pages, JBrowse, and the new interactive visualization tools such as TripalMap for genetic maps and Tripal Synteny Module for browsing conserved syntenic blocks among genomes. We will also highlight access to available public data through the new Breeding Information Management System (BIMS), a resource being developed for breeders to manage, store, and analyze their private breeding data integrated with public data in these databases.
See more of: NIFA National Research Support Project 10: Specialty Crop Database Resources for Genomics, Genetics and Breeding Research *CEU Approved*
See more of: Workshop Proposals