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2018 ASHS Annual Conference

NIFA National Research Support Project 10: Specialty Crop Database Resources for Genomics, Genetics and Breeding Research *CEU Approved*

Objective(s):
The objectives of this workshop are to (1) Update NRSP10 participants and other specialty crop researchers on new development of specialty crop genomic, genetic and breeding community database resources (2) Provide specialty crop researchers with outline of plans for the next 5 years of this project (3) Solicit feedback from the community on database and tool development needs and extension activities associated with this project.
National Research Support Project 10 (NRSP10, www.nrsp10.org) is a USDA NIFA funded, five year project (2014-2019) providing national crop database resources for under-served crops with a focus on specialty crops. It involves broad support and participation from US Land Grant Universities Experiment Stations and industry, many of who will present updates of project features or be participants in this follow up workshop to the one held at ASHS 2017. It will be will include a series of talks by scientists who use these rosaceae (www.rosaceae.org), citrus (www.citrusgenomedb.org), and vaccinium (www.vaccinium.org) database resources to enable their genomics, genetics and breeding research, highlight new data and functionality, present ideas for further work and solicit feedback from the workshop attendees. Each presentation will be 10-12 minutes with 3-5 minutes for discussion and each presentation will conclude with a slide containing one or more question to facilitate the discussion. The presenters will coordinate these questions ahead of time and reach out to known attendees through our mailing list to ensure the questions are pertinent and relevant to the goals of the workshop. This will be followed by a 30 minute general discussion session to solicit further feedback on community needs for the next five-years of this project.

Example questions for the participants might include:

Staton Presentation: Do you need help with setting up a project database using Tripal or do you see using your community database as able to meet your project data management and project data sharing and analysis needs?

Rife Presentation: What challenges or impediments do you have or forsee having in your ability to use the FieldBook App to collect phenotype data from the field

Peace Presentation: Do you see your program as being able to utilize global prediction functionality and if so what might be the challenged your would face in using it?

Jung Presentation: Is there any functionality you need in these databases that we don't have? If so, is that functionality available in other databases?

Gasic Presentation: Do you like the functionality of BIMS? What can we do or provide to help you be able to use it? Any limitations you can see with it?

Main Presentation: Do the planned activities for the next 5 years look appropriate? Are there other activities we should be including and if so what are they?

General Discussion:
Is it clear what these database resources and tools provide to you? What are we doing well in this project and where are we not doing well and could improve? Should NRSP10 have a larger role in educating young scientists on data management, data nomenclature, data submission to maximize possible re-use and impact of their research data and results?

Thursday, August 2, 2018: 1:45 PM
Jefferson West (Washington Hilton)
Coordinator:
Moderator:
1:50 PM
Tripal v3, the Collaborative Online Database Platform Supporting an International Community of Plant Genome Databases
Margaret Staton, University of Tennessee, Knoxville; Abdullah Almsaeed, University of Tennessee, Knoxville; Bradford Condon, University of Tennessee; Ming Chen, University of Tennessee; Jill Wegrzyn, University of Connecticut; Emily Grau, University of Connecticut; Nic Herndon, University of Connecticut; Sook Jung, Washington State University; Lisa Sanderson, University of Saskatchewan; Kirsten Bett, University of Saskatchewan; Dorrie Main, Washington State University; Stephen P. Ficklin, Washington State University
2:05 PM
New Data and Functionality in NRSP10 Databases
Sook Jung, Washington State University; Taein Lee, Washington State University; Chun-Huai Cheng, Washington State University; Jodi Humann, Washington State University; Jing Yu, Washington State University; Katheryn Buble, Washington State University; Morgan Frank, Washington State University; Kristin Scott, Washington State University; Deah McGaughey, Washignton State University; Heidi Hough, Washington State University; Victor Unda, Washington State University; Ksenija Gasic, Clemson University; B. Todd Campbell, USDA-ARS; Don Jones, Cotton Incorporated; Sushan Ru, University of Wisconsin-Madison; James Crabb, Washington State University; Kate M. Evans, Washington State University - Tree Fruit Research and Extension Center; Lisa Wasko DeVetter, Washington State University; James R. McFerson, Washington State University, TFREC; Cameron Peace, Washington State University; Mike Kahn, Professor, Washington State University; Margaret Staton, University of Tennessee, Knoxville; Jill Wegrzyn, University of Connecticut; Stephen P. Ficklin, Washington State University; Albert Abbott, University of Kentucky; Main Dorrie, Washington State University
2:35 PM
Using the Tripal Breeding Information Management System to Improve Breeding Efficiency
Ksenija Gasic, Clemson University; Taein Lee, Washington State University; Sook Jung, Washington State University; Jodi Humann, Washington State University; Jing Yu, Washington State University; Heidi Hough, Washington State University; B. Todd Campbell, USDA-ARS; Cameron Peace, Washington State University; Kate M. Evans, Washington State University - Tree Fruit Research and Extension Center; Dorrie Main, Washington State University
2:50 PM
Extending the Tripal Breeding Information System to Combine International Data for Global Performance Predictions
Cameron Peace, Washington State University; Craig M. Hardner, University of Queensland; Sook Jung, Washington State University; Taein Lee, Washington State University; Dorrie Main, Washington State University
3:05 PM
NSRP10 - the Next Five Year Plan: Furthering Integration of Big Data, Tools and Analysis Capability to Enable Specialty Crop Research Discovery and Improvement
Doreen Main, Washington State University; Sook Jung, Washington State University; Jodi Humann, Washington State University; Cameron Peace, Washington State University; Ksenija Gasic, Clemson University; James R. McFerson, Washington State University, TFREC
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